Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs143420457 chr1:220264377 C/T 4.25E-5 481 31.23 24.9 39.5 KM Plot
PRAD rs143475983 chr3:14037470 GTTCA/G 0.00014 492 30.77 31.37 21.58 KM Plot
PRAD rs143541793 chr2:107435807 GA/G 1.57E-5 488 30.87 30.7 32.63 KM Plot
PRAD rs143599191 chr11:36308862 T/C 8.91E-5 481 30.8 32.43 27.57 KM Plot
PRAD rs143878816 chr7:135104004 CCTATT/C 2.14E-9 490 30.8 31.9 3.03 KM Plot
PRAD rs143927632 chr5:154161149 G/A 0 491 30.2 33.47 4.87 KM Plot
PRAD rs144146238 chr9:72914573 TC/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs144219745 chr11:6930651 C/G 1.47E-12 492 31 28.67 18.13 KM Plot
PRAD rs144312087 chr19:53133601 G/A 4.35E-6 488 30.8 31.18 26.27 KM Plot
PRAD rs144415248 chr9:72945573 C/A 1.75E-5 492 30.8 31.4 22.45 KM Plot
PRAD rs144548059 chr22:18480841 G/GTGAA 3.13E-8 480 30.27 31.87 27.83 KM Plot
PRAD rs144688912 chr19:45470192 A/G 4.82E-5 487 30.33 30.9 45.2 KM Plot
PRAD rs144711443 chr5:154272657 A/AAAAC 0 494 30.2 33.47 5.58 KM Plot
PRAD rs144711450 chr9:72849262 A/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs144731924 chr9:72868615 G/T 1.73E-5 493 30.8 31.35 22.45 KM Plot